I consider myself incredibly privileged that, in my capacity as researcher, a major part of my job it to simply pursue my natural curiosities. My research goals center around understanding the processes that have given rise to the phenotypic diversity of birds. In particular, for my PhD, under the advice of the excellent Robb Brumfield and with funding from Brazil's National Council for Scientific development (CNPq), I'm using phylogenetic comparative and genomic tools to study color evolution in the Furnariida, a large clade of dull-colored Neotropical passerines. Bird color has been a major topic in evolutionary biology since Charles Darwin and Alfred Russell Wallace. Most investigations have focused on gaudily-colored, showy taxa, but those actually compose a minority of the world's birds. I believe we have a lot to learn from superficially less charismatic birds colored in innumerable shades of grey, brown and dark green. Below I describe a few of the specific topics I'm currently working or have recently worked on. For a complete and up-to-date list of my publications, check out my Google Scholar profile. Please do not hesitate to contact me if you would like a pdf of one of my works.
Macroevolution of plumage color in the Furnariida
The Furnariida are a clade of more than 1,000 species of passerine birds that occupy essentially ever habitat type in the Neotropics. They include, among others, the antbirds, horneros, woodcreepers, antthrushes, gnateaters and tapaculos. Their colors vary greatly in brightness (the light-to-dark spectrum), but little in hue (the actual color), and, making them particularly interesting from an evolutionarily perspective, they include sexually dichromatic as well as monochromatic lineages. With help from a number of very hard-working undergraduate students at LSU, and taking advantage of the world-class ornithological collection at the LSU Museum of Natural Science, I have generated reflectance data from more than 3,000 specimens, amounting to a dataset that is 90% complete at the species-level. Using phylogenetic comparative methods, I showed that the dorsal and ventral plumages of birds in this clade are under very different evolutionary regimes. I also showed that in the sexually dichromatic lineages, male and female plumage are evolving under similar rates. This is remarkable because sexual dichromatism is usually thought to evolve due to more intense sexual selection in one of the sexes, and sexual selection is thought to act quite rapidly. The publication where I describe these results is here. I'm still full of ideas to put this dataset to further use, and those ideas will hopefully one day materialize in the form of peer-reviewed publications.
Extraordinary plumage color variation, Gloger's rule and genomics in the Variable Antshrike (Thamnophilus caerulescens)
The English name of this small South American passerine is evocative and very apt. Across its vast distribution, the Variable Antshrike includes forms whose plumage color varies from essentially all-black to almost pure white, including also various shades of grey and brown. In the early 2000's, my advisor and co-author Robb Brumfield had the foresight of identifying this as an interesting system from an evolutionary perspective. He collected more than 100 specimens in south-central Bolivia, where very disparate plumage types come into close geographic contact, and used mitochondrial DNA to show that these subspecies are undergoing rampant hybridization. For my PhD, we figured it would be fun and informative to go back to these specimens and tissue samples and analyze them with modern tools that weren't available to Robb at the time. So far, I have been able to quantitatively show, using reflectance data, that the degree of plumage variation in this species is in fact exceptional when compared to other members of the family Thamnophilidae. I have also shown that this variation is partially consistent with Gloger's rule, a classic ecogeographical rule that relates animal color to climatic variation: as predicted, these antshrikes tend to be darker in rainier areas but, contrary to expectations, they are not darker in warmer places. Finally, in close collaboration with Gustavo Bravo and Scott Edwards at Harvard University, I have generated low-coverage whole-genome resequencing libraries from a large number of individuals, and I'm currently working my way through the resulting mountain of genomic data to try and figure out the population structure of the Bolivian populations of this species and the genomic basis of its impressive plumage variation. Stay tuned for the first publications out of this project in the not-too-distant future!
Practical issues in phylogenetic comparative methods
I'm an avid user of phylogenetic comparative methods (PCMs), a powerful set of tools that uses phylogenies to answer questions about the evolutionary processes that have generated biological diversity. One of the most challenging but also most intellectually stimulating aspects of using PCMs as an empiricist is confronting a multitude of small practical decisions that have to be made about how exactly to tailor my data and questions to the available methods. Often I have found that there is little published guidance on how to go about making those decisions, or whether or not certain shortcomings of empirical data may have detrimental effects on the inferences we can make. For example, while collecting data for my work on the macroevolution of plumage color in the Furnariida (see above), I noticed that the species that were missing from my dataset (due to their rarity in museum collections) tended to be clustered in just a few genera. I wondered if that presented a problem for the performance of the models of trait evolution I planned to use. Intrigued, I conducted a set of simulations to address that question. The results of those simulations are here. In short, they show--to my surprise-- that that missing taxa, even when phylogenetically clumped, seem to have bad effects on model performance only under very specific circumstances. In the future, I hope to continue pursuing this line of research, addressing other practical questions relevant to the empiricist using PCMs.
Systematics of Aramides wood-rails
Before coming to LSU for my PhD, I obtained a Masters degree working under Luis Fabio Silveira at the Zoology Museum of the University of São Paulo. I used characters of external morphology and vocalizations to review the systematics of the genus Aramides, a small group of rails with a wide distribution in the Neotropics. The main result of this research was the demonstration that what was previously considered a single species, the Grey-necked Wood-rail, is actually two species, the Rufous-naped Wood-rail (A. albiventris) and the Grey-cowled Wood-rail (which retained the Latin name A. cajaneus). These two species have parapatric ranges separated by the mountains of the Costa Rican volcanic front, and are distinguished by fixed characters of song and plumage color. One of the proudest moments of my career so far came when the ornithological powers-that-be decided to accept my proposed split. The many many hours I spent staring at hundreds of specimens during this research ignited my interest in understanding the causes of subtle plumage color variation between species and populations, which later on became the topic of my PhD dissertation.
